Welcome to the Naef-Lab wiki


Index

1. Software
2. Publications

Software

• SLM
  SLM is a software to analyze ChIP on tiling arrays data. For more information, check "Identifying synergistic regulation involving c-Myc and sp1 in human tissues" - F. Parisi, P. Wirapati and F. Naef - NAR (in press)

  download SLM
  FAQ
  Online documentation
  
  

• Fourier analysis for tiling arrays (fou++) 

fou++ is a software to analyze rhythmic gene expression profiles from tiling arrays mRNA data.  

download fou++ 

• Patterning models for Ingeneue

 Related Publications

• SLM: Identifying synergistic regulation involving c-Myc and sp1 in human tissues (F.Parisi, P.Wirapati and F.Naef - NAR (in press))
  Link to the article Online supplementary material

• FOU++: Hazen et al., submitted.

• FOU++: Wijnen H, Naef F, Young MW, Molecular and statistical tools for circadian transcript profiling. Methods Enzymol. 2005;393:341-65.

• FOU++: Wijnen H, Naef F, Boothroyd C, Claridge-Chang A, Young MW. Control of daily transcript oscillations in Drosophila by light and the circadian clock. PLoS Genet. 2006 Mar;2(3):e39

Other publications

For more information about us, check the ISREC or EPFL websites